Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11531g00001 ATGAGCTTATGGGTGAAATTAGGCTTAACACCTGGTTCAGTTTCTTTACAAAATCCTTTTTTCAATGGTGATGATTATCTTCAAATGCAACTAGCACTCTTTCCACCAACAGGACTATATTTTAATAGGTCAGAAGTTCAAAGGATTGGATTTTCATTGAATTCGCGCAAAGGATCTACTTTTAGCAGAGGTATTATTATTGCGATAGCAGCTGGGAGTGTATTTCTGGTTTTGTGCCTCATAGGGTTAGTTGTATACGCAATCCTGCAAAAGAAGCGCGCAGAGAAAGCCATCGGAATAAGTAGACCATTTGCATCCTGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCACAATTGAAGGGAGCAAGATGGTTCTCTTATGATGAACTTAAAAAGTGCACAAACAATTTCTCTGGAAGCAATGAACTAGGCTTTGGTGGCTATGGCAAGGTGTACAAGGGGGTGTTCCCTGACGGAAAAATAGTTGCAATCAAAAGAGCTCAGCAAGGATCAATGCAAGGAGGCCTAGAGTTCAAGAATGAAATCGAGTTACTTTCAAGAGTTCATCACAAGAATCTTGTTAGCCTAGTTGGATTCTGCTTTGAACAAGGAGAACAAATGTTGGTTTATGAATTTATCTCCAATGGAACACTTAGGGAGA 664 0.4066 MSLWVKLGLTPGSVSLQNPFFNGDDYLQMQLALFPPTGLYFNRSEVQRIGFSLNSRKGSTFSRGIIIAIAAGSVFLVLCLIGLVVYAILQKKRAEKAIGISRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCTNNFSGSNELGFGGYGKVYKGVFPDGKIVAIKRAQQGSMQGGLEFKNEIELLSRVHHKNLVSLVGFCFEQGEQMLVYEFISNGTLRE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11531g00001 221 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 219 - -
Trme11531g00001 221 ProSitePatterns Protein kinases ATP-binding region signature. 144 166 IPR017441 GO:0005524
Trme11531g00001 221 ProSiteProfiles Protein kinase domain profile. 138 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11531g00001 221 Gene3D Phosphorylase Kinase; domain 1 111 213 - -
Trme11531g00001 221 FunFam Leucine-rich repeat protein kinase family protein 106 213 - -
Trme11531g00001 221 SUPERFAMILY Protein kinase-like (PK-like) 121 220 IPR011009 -
Trme11531g00001 221 Pfam Protein tyrosine and serine/threonine kinase 142 220 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11531g00001 Trme-Chr11531 8 1560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11531g00001 1 221 Receptor kinase-like Gene Family AT1G79620 68.163 6.13e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trme11531g00001 PK_Tyr_Ser-Thr 2.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11531g00001 - - gmx:100792249 367.081