Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115301g00001 ATGGAAAATTGCTTTGCAAATCTATGCGGTGTGTTCAAGAAGCAAAAACGAAAGGAAAAGCCCGGGGAAGACCGGCCTGAGCAGATAAAAAACATCAACACCAATAAATTGGTGGTGTTAAGAGAACCCACGGGCCGAGAGATTGGGCTACGATACGAGTTAGGAAGGGAATTAGGGAGAGGTGAATTCGGAATAACGTATYTATGCAAAGATAGACAAACAGGAGAAGAACTTGCTTGCAAGTCGATTTCGAAGAATAAGCTTAGAACTGCWATTGATATTGAAGATTTGAGAAGACAAGTTGAAATCATGAGGCATTTACCTGAACATCCTAACATCGTTTCGTTGAAGGATACTTATGAAGATGAAGATGATGTTCATCTTGTTATGGAACTCTGTCAAGGTCGTAACCTTCTCGATCGCATCGTTGCTAGAGGACATTACACCGAATGCTCCGCAGCTTCTGTAATTAAAACCGTCGTCGAAGTTGTTCAG 495 0.4162 MENCFANLCGVFKKQKRKEKPGEDRPEQIKNINTNKLVVLREPTGREIGLRYELGRELGRGEFGITYLCKDRQTGEELACKSISKNKLRTAIDIEDLRRQVEIMRHLPEHPNIVSLKDTYEDEDDVHLVMELCQGRNLLDRIVARGHYTECSAASVIKTVVEVVQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115301g00001 165 Pfam Protein kinase domain 52 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115301g00001 165 SUPERFAMILY Protein kinase-like (PK-like) 51 162 IPR011009 -
Trme115301g00001 165 Gene3D Transferase(Phosphotransferase) domain 1 45 165 - -
Trme115301g00001 165 ProSiteProfiles Protein kinase domain profile. 52 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115301g00001 165 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 165 - -
Trme115301g00001 165 SMART serkin_6 52 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115301g00001 165 FunFam Calcium-dependent protein kinase 1 54 137 - -
Trme115301g00001 165 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115301g00001 Trme-Chr115301 86 580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115301g00001 36 165 EF-hand Containing Proteins AT5G19450 72.308 1.15e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme115301g00001 Pkinase 2.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115301g00001 K13412 - oeu:111403487 207.223