Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11527g00001 ATGATCATGCTCCTCTTTGTTGAAGTGGCTAGTAATAAAGTGAAACCAAAGCATGTTCCATTACCCGCTGAAAAAAGGCAAGAGGTCCCTTCGCTGAAAAGGAGGAAAATTGGTCCGGTAGAGAATTCATTTAATTTAGAAAATAAAGACAATCTTAGAGGTGAATGGACCCCTTACTCAGTTGGTTCTAATTTCACACCCCACATCATTACTGTTAATGCTGGAGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTCTATGCATTCTTTCAGCAAATGGTGTCATAAAAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGATTATTTGAAATTCTGTCTTTATCTGGTTCTTTCACGCCAAATGAAAGTGGAGGAACACGAAGCAGATCAGGTGGCATGAGTGTTTCTTTAGCAAGTCCTGATGGACGTGTTGTTGGTGGAGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCAGTGCAG 522 0.4291 MIMLLFVEVASNKVKPKHVPLPAEKRQEVPSLKRRKIGPVENSFNLENKDNLRGEWTPYSVGSNFTPHIITVNAGEDVTMKVISFSQQGPRALCILSANGVIKSVTLRQPDSSGGTLTYEGLFEILSLSGSFTPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQ 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11527g00001 174 Gene3D - 67 174 - -
Trme11527g00001 174 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 174 IPR005175 -
Trme11527g00001 174 SUPERFAMILY AF0104/ALDC/Ptd012-like 63 174 - -
Trme11527g00001 174 CDD DUF296 66 157 IPR005175 -
Trme11527g00001 174 ProSiteProfiles PPC domain profile profile. 62 174 IPR005175 -
Trme11527g00001 174 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 174 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11527g00001 Trme-Chr11527 44 1547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11527g00001 16 174 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 74.390 5.76e-77 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11527g00001 - - csat:104737221 206.838