Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115272g00001 ATGTCTACATTTGGTGTTGGCAACAATGATGGAGCAGTTGCAAATCAGATAGCTTTGATTATTGATGGTGGAAGCCTTGTACACATTCTTGATAGTGAACATGAAGAAGAGCTATTTCAACTTGCAAGTTTGTGTTCCGTTGTTCTTTGTTGTCGAGTTGCTCCACTGCAAAAGGCTGGTATTGTTTCCCTTGTGAAGAATAGGACATCTGATATGACACTAGCCATTGGAGATGGTGCTAATGATGTGTCAATGATTCAAATGGCCGATGTTGGAGTTGGTATC 285 0.407 MSTFGVGNNDGAVANQIALIIDGGSLVHILDSEHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKNRTSDMTLAIGDGANDVSMIQMADVGVGI 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115272g00001 95 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 11 95 - -
Trme115272g00001 95 Gene3D - 5 95 IPR023214 -
Trme115272g00001 95 Pfam haloacid dehalogenase-like hydrolase 67 93 - -
Trme115272g00001 95 SUPERFAMILY HAD-like 36 95 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115272g00001 Trme-Chr115272 1 505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115272g00001 6 95 Primary Pumps ATPases AT5G04930 71.111 5.69e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115272g00001 K14802 - gmx:100813836 150.214