Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115142g00001 ATGGATGCAGGTGACTTTGGTCTTGCTAAAATGTTGACAAGCGATGATCTTGCTTCTTCGATTGTGGGGACTCCGAGTCATATGTGCCCAGAGCTTCTTGCTGATATACCATACGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCGGCTCACAAACCAGCTTTTAAAGCTCTT 192 0.4479 MDAGDFGLAKMLTSDDLASSIVGTPSHMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKAL 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115142g00001 64 Gene3D Transferase(Phosphotransferase) domain 1 1 64 - -
Trme115142g00001 64 SUPERFAMILY Protein kinase-like (PK-like) 4 62 IPR011009 -
Trme115142g00001 64 Pfam Protein kinase domain 4 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115142g00001 64 ProSiteProfiles Protein kinase domain profile. 1 64 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115142g00001 64 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115142g00001 Trme-Chr115142 202 588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115142g00001 4 61 MAP Kinase Kinase Kinase AT5G67080 47.541 9.12e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trme115142g00001 Pkinase 2.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115142g00001 K08857 - dcr:108209601 127.487