Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114942g00001 ATGGCGGCGGCACGGCGGCTCCGTGAGCTTCAATCAGACCAATCAAACAAGATCTGCGTCGACTGTTCTCAAAAGAATCCACAATGGGCTTCCGTTTCCTACGGAATTTTCATGTGTCTAGAATGTTCCGGCAAACACCGTGGCCTCGGCGTTCACATCTCCTTCGTCCGATCTGTTACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNTTTATCGCGATCGGATTCAAGCTCTTGCTGAAGGTCGTTCATGGCGGGATCCACCGGTTGTTAAGGAGAATTCGAATTCGAATGCGAATGCGAATACCCGTCCTGGAAAAGGGAAGCCGCCTCTGGCTTCGTCGAATGGAAGTGGTTGGGATGATAATTGGGATAATGATGACAGTTATGGATCTCGTGCTGATATAAGGAGGAATCAGAGTACTGGTGATGTTATGGGATTTGTTGGTGGTGGTGGTGGTGTTACTCCGTCGAGGTCTAAATCGACGGAGGATATTTATA 607 0.3789 MAAARRLRELQSDQSNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRDRIQALAEGRSWRDPPVVKENSNSNANANTRPGKGKPPLASSNGSGWDDNWDNDDSYGSRADIRRNQSTGDVMGFVGGGGGVTPSRSKSTEDIY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114942g00001 202 Gene3D Arf GTPase activating protein 1 65 IPR038508 -
Trme114942g00001 202 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Trme114942g00001 202 SUPERFAMILY ArfGap/RecO-like zinc finger 5 61 IPR037278 -
Trme114942g00001 202 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 137 IPR001164 GO:0005096
Trme114942g00001 202 MobiDBLite consensus disorder prediction 118 202 - -
Trme114942g00001 202 Coils Coil 107 110 - -
Trme114942g00001 202 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 106 202 IPR044519 GO:0005096|GO:0016192
Trme114942g00001 202 MobiDBLite consensus disorder prediction 125 139 - -
Trme114942g00001 202 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Trme114942g00001 202 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Trme114942g00001 202 Pfam Putative GTPase activating protein for Arf 5 61 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114942g00001 Trme-Chr114942 35 641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114942g00001 5 60 C2H2 Transcription Factor Family AT4G05330 51.786 1.35e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114942g00001 K12492 - qsa:O6P43_010403 200.29