Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11491g00001 TTACATGCAGAAATGTGCAGAAGTCTTTCTGCAATATATTGTAAAATATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCTGGAATTCAGGCATTATGTTCACTGCATGTAGCCTTAGAGAAGGCGAAGAACGTACTTCAGCACTGCACAGAGTCTAGTAAACTTTACTTGGCTATAACTGGAGATTCCGTTCTTGTAAAATTTGAGAAGGCCAAGTGTGCTATTGTAGATAGTCTTAAGCTGGTAGAAGATATTGTTTCCCAATCAATTGCATGTCAGATTGATGAAATTGTGAACGAAATTTCTGGTATGGTGTTTGCGCTTGATCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGATAGAAAGTTTAACAACTCTAATGACAGTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAAACTTGGAATCACGTCTTCCAGAGCAGCTCTCACCGAAAGAAGAGCTCTAAAAAAACTCATTGAAAGGGCTCGGGCCGAGGAAGACAAGAGGAAGGAGTCAATTATTGCATATCTATTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAAGGTTCTCAACCTTGTTCTCCCACCGTTCAGAGACCCCTCGAGGATGGTGTTCCTGCTGGTCATTGTCAAGCCTTTGATAGACAGATGTCAAAACTTAGTTCCTTTAATTTTAAGCCGAACAATAAGAAATCGGGACAAATGCCCCTTCCACCAGAAGAATTAAGGTGTCCAATCTCTCTGCAACTTATGAGCGATCCTGTTATAATTGCTTCTGGACAGACATATGAAAAAGCTTGTATAGAAAAATGGTTCAATGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTCACACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCCGAAGGTCCTCCCGAATCTCTTGATTTTAATTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGCAAACAGTGTCAACTCTTGCAAAATGAAGGGTGTCAAAGTTGTTCCTCTTGAAGAGAATGTTATCTTAGAGAAAACTGAGGGAAATGCAACTGAAACTTTGTCTACACAAGA 1202 0.3977 LHAEMCRSLSAIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCTESSKLYLAITGDSVLVKFEKAKCAIVDSLKLVEDIVSQSIACQIDEIVNEISGMVFALDPSEKQVGDDLIALLQQDRKFNNSNDSSELECFHMAATKLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRPLEDGVPAGHCQAFDRQMSKLSSFNFKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYEKACIEKWFNDGHNTCPKTQQKLTHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSANSVNSCKMKGVKVVPLEENVILEKTEGNATETLSTQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11491g00001 400 FunFam RING-type E3 ubiquitin transferase 261 335 - -
Trme11491g00001 400 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Trme11491g00001 400 MobiDBLite consensus disorder prediction 205 229 - -
Trme11491g00001 400 Coils Coil 158 178 - -
Trme11491g00001 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 335 IPR013083 -
Trme11491g00001 400 Pfam U-box domain 263 332 IPR003613 GO:0004842|GO:0016567
Trme11491g00001 400 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Trme11491g00001 400 PANTHER U BOX DOMAIN-CONTAINING 4 345 - -
Trme11491g00001 400 MobiDBLite consensus disorder prediction 207 221 - -
Trme11491g00001 400 SUPERFAMILY RING/U-box 259 337 - -
Trme11491g00001 400 CDD RING-Ubox_PUB 263 315 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11491g00001 Trme-Chr11491 60 1649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11491g00001 1 387 U-box Gene Family AT1G24330 72.938 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11491g00001 - - gmx:100804344 702.59