Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114917g00001 GTTCGCTTGATGTCTAATAATGGCANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNCATTGCAAAAAGCTGCTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAGTTTGCAAGATCACTTGTAACAGCATGGATATTTACATTACACACTTAGCCGGTAAGAAACACTTGAAGAACTTGGAGAAACTGTCAAATCCAAAAACCGATGCCGGCACCGGTGCCACTACCACTGACACTGCAGCAAATACTTTAATCGGGCCACAGGAAAAGCCAGATACTGATAAACCAACATCAAAGAAGGCACCAGAAGTTGATATCGAGACGAAGAAACGTAAAGTTGTGGAAGGAGGAGCTGC 371 0.3827 VRLMSNNGXXXXXXXXXXXXXXXLQKAAKKIKVAQSAWCEVCKITCNSMDIYITHLAGKKHLKNLEKLSNPKTDAGTGATTTDTAANTLIGPQEKPDTDKPTSKKAPEVDIETKKRKVVEGGAA 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114917g00001 124 Gene3D Classic Zinc Finger 23 68 - -
Trme114917g00001 124 Coils Coil 24 37 - -
Trme114917g00001 124 PANTHER ZINC FINGER PROTEIN 385B-LIKE 27 123 - -
Trme114917g00001 124 MobiDBLite consensus disorder prediction 70 91 - -
Trme114917g00001 124 SMART ZnF_U1_5 34 68 IPR003604 GO:0003676|GO:0008270
Trme114917g00001 124 SUPERFAMILY beta-beta-alpha zinc fingers 35 68 IPR036236 -
Trme114917g00001 124 MobiDBLite consensus disorder prediction 63 124 - -
Trme114917g00001 124 Pfam Zinc-finger of C2H2 type 38 61 - -
Trme114917g00001 124 MobiDBLite consensus disorder prediction 97 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114917g00001 35 88 C2H2 Transcription Factor Family AT5G61190 41.071 3.08e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114917g00001 - - cam:101495339 160.229