Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11482g00001 ATGATGATCGGAGAACACCATCGATCAAATCCAACGGTTCATATTCCTCCATGGCCAAATCACGATGATCCAACGTCTGAAATGTACTCCTCTTATTACCCTGACGATAGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTCCGTGAAGCAATGGCGGCGCTGCAGCGTTATCTTCCGTCAAACGAGTTCGACGCTGTCGACGGCGATTCTGATTCAGAATCTCCGGCGGATTCTCCGGTGGACGCTTTTACATGCGATCATTTTCGTATGTACGAGTTCAAGATAAGAAGATGTGCACGTGGAAGATCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCACGCCGTCGTGATCCGAGAAAATTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGAAACTGTAAAAAAGGTGACGCGTGTGAATACGCGCACGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACTCAGCCATGCAAAGACGGTACTAGCTGTCGCCGCCGTGTTTGTTTCTTCGCTCACACGCCGGAACAGATCCGTCTCAATGTTAACAGTCCACCTCCACGTAGTCTTAACTCGCCGGATTCATACGACGGTTCTCCGTTACGACAAATGGCGTTACCGTTACCTTTCATGTCTTCACCGGTTTCAACCACTCCACCGGAGTCACCGTCGCCGCCGATGTCTCCGATGGCTCAGTCTCTGAGTAAATCTCTCGGCTCGAGTTCAATCAACGAGATGGTTGCTTCTTTACGTAATCTGCAGCTTGGAAAATTGAAATCTATACCTTCTATGCCGGCTAATAGAAACATTTC 848 0.4953 MMIGEHHRSNPTVHIPPWPNHDDPTSEMYSSYYPDDSNAGAGDYSPYYLREAMAALQRYLPSNEFDAVDGDSDSESPADSPVDAFTCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVNSPPPRSLNSPDSYDGSPLRQMALPLPFMSSPVSTTPPESPSPPMSPMAQSLSKSLGSSSINEMVASLRNLQLGKLKSIPSMPANRNIS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11482g00001 283 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Trme11482g00001 283 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Trme11482g00001 283 MobiDBLite consensus disorder prediction 192 250 - -
Trme11482g00001 283 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Trme11482g00001 283 MobiDBLite consensus disorder prediction 1 34 - -
Trme11482g00001 283 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Trme11482g00001 283 PANTHER UNKEMPT FAMILY MEMBER 51 272 IPR045234 -
Trme11482g00001 283 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Trme11482g00001 283 MobiDBLite consensus disorder prediction 225 239 - -
Trme11482g00001 283 Gene3D - 130 192 - -
Trme11482g00001 283 MobiDBLite consensus disorder prediction 192 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11482g00001 Trme-Chr11482 1 848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11482g00001 85 236 C2H2 Transcription Factor Family AT5G12850 58.491 4.45e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme11482g00001 zf-CCCH 9.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11482g00001 - - aprc:113867365 445.662