Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1145g00001 ATGCCTTCAAGACAAATACCTTCTACAAGTTCCAATTTTTTCACCAAACCCAAGTTCATATTCATAGCACTCACCATTTCAGCTTCTGTTGTGATTTTCTTCTCAATCCTTTACTTCCTTTACCATCTTTGGCATTCTCTTGTACACAGAGCCAAGACCATCCCTTTTGATGCTAGTGCTCCTTTGAAGCTCCAAAGATTCTCCTACAAAGACTTAAAGCTAGCCACCAATGCCTTTGACACTTCCAATATCATTGGCAAAGGTGGTTCTGGTACTGTTTTCAAGGGTGTACTTAAAGATGGAAAATTTATTGCCATCAAACGGTTGGACTCATTGTCTTTGCAATCAGAGAGAGAGTTTCAAAATGAGTTGCAGATTCTTGGAGGGTTGAGATCACCCTTTTTGGTGACCCTTTTGGGCTATTGTGTTGAAAAGAATAAGAGAATTTTGGTGTATGAGTATATGCCTAACACAAGCTTGCAAGAGTCACTCTTTGGTGATGAGTGTTTTGGTTTGAGTTGGGAAAGAAGGTTTTGCATAATAATGGATGTTGCTAGAGCATTGGAGTTTTTGCACCTTGGATGTGATCCACCTGTGATTCATGGTGATATTAAGCCAAGCAATGTGTTGCTTGATGCCGAGTTCCGCGGGAAGATCTCGGATTTTGGTTTGTCAAGGATTAAGGTGGAGGGTGAATTTGGAGCTGACTTGTTTAGCCAGGATTTGGGGAAGAGTCAAGATCTTTGGAAAAGCCAAGACCTTTCAGGTAATTTGACTGCAGAAACTCCTGTAATTGGCACTCCTGTTGAGAGTGTTAGTGAAGTTGATTTTGCTCTTGCTTTGCAAGCTTCTTCTTCATCCAAAAATAGTAGGACTTGTTTAAATGTTAAAGCTTTGAACTTGAACTCTTTGAATTATAATGCCAATATTGTTGGTGAAAGTGAAAGTAGGAGTGTAAATACAAAGGGTAAGGAAATTTCAAGTTTGGATATAGGAGGAGGAAGGGATGATTGGAATAATAATAATAATATGTTTGTTCCTTATGATGATGAGTTTTATAGCACTGATTATAGTAAGGAGTTGGCTGTTAATAATGCTTCTTGTTTGGTTGATGATGAGAAGGAAAATGGGAAACAATGGGGAAAAGATTGGTGGTGGAAACAAGATGGAAGTGGTGAGTTATGTAGTAAAGACTATGTCATGGAGTGGATTGGGAGTCAGATTTGTCCATCAAATGCTGATTGGGATGATGGTATTGATAGTACTAAGAACAACAACATTCAGGAGAAATCAGAGTTGGAAAATTCAAGTCCAATAGGTAAAACCAGTGATGCAATTGCAAATGGACCACAATTACAGGTATCTGTGATGGAAGATGCAGATAATGGAGTTGTTGATATGAAAGAACTGAAGGGAAAGAAAAGCCACAAGATGAAGAATAGGAAGATGCAAGAGTGGTGGAAAGAAGAACATCTTGCTGAATTAAGCAAGAAGAATTCCAACAAGCTGAAAAGTCTTCAAACTAAATGGAAGAAAGGCTTGAAAGTGATGCCTCATTTTGGTTTGGGTAGAAGGTTCTATCTTTGCCGACGTAATAAGAACTATGGAGAGGAAGGACATGATGAGTGTGAACAAAATGGTGAGTTTAGCTTCAGAAGAGGTTGGAGGAAAAAAAGCACGCGTTCGATTGGAAGTGACATGTGGAGTGGAGATCTTTTCAGCCGCGAACTCAGCAGCACAACTAGTATGAGAGGTACACTGTGTTATGTAGCACCGGAATATGGAGGGTGTGGATTCTTAATGGAGAAAGCTGATATATACAGTTTTGGAGTTTTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCTCCTATGAAGCTAGAGAAAGCTAACTTAATTAGCTGGTGTAGACACTTGGCTCAAGCTGGTGGCAGTAACATTTTAGAACTAGTTGATGAAAAATTGAAAGAAGATGATTACAACAAGGAACAAGCAAGCATGTGTATCAACTTGGCACTCACTTGTTTACAGAAAATTCCAGAGTTGAGGCCAGATATTGGAGACATTGTTAAGATTTTGAAGGGGGAGATGGAACTTCCACCACTTCCATTTGAGTTCTCTCCTTCTCCACCTTCCAGATTATACAGCAGATCAAGGAGAAAACAGAAGAGCAATGTAGAATAG 2199 0.3925 MPSRQIPSTSSNFFTKPKFIFIALTISASVVIFFSILYFLYHLWHSLVHRAKTIPFDASAPLKLQRFSYKDLKLATNAFDTSNIIGKGGSGTVFKGVLKDGKFIAIKRLDSLSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRILVYEYMPNTSLQESLFGDECFGLSWERRFCIIMDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEFRGKISDFGLSRIKVEGEFGADLFSQDLGKSQDLWKSQDLSGNLTAETPVIGTPVESVSEVDFALALQASSSSKNSRTCLNVKALNLNSLNYNANIVGESESRSVNTKGKEISSLDIGGGRDDWNNNNNMFVPYDDEFYSTDYSKELAVNNASCLVDDEKENGKQWGKDWWWKQDGSGELCSKDYVMEWIGSQICPSNADWDDGIDSTKNNNIQEKSELENSSPIGKTSDAIANGPQLQVSVMEDADNGVVDMKELKGKKSHKMKNRKMQEWWKEEHLAELSKKNSNKLKSLQTKWKKGLKVMPHFGLGRRFYLCRRNKNYGEEGHDECEQNGEFSFRRGWRKKSTRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGGSNILELVDEKLKEDDYNKEQASMCINLALTCLQKIPELRPDIGDIVKILKGEMELPPLPFEFSPSPPSRLYSRSRRKQKSNVE 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1145g00001 732 FunFam putative receptor-like protein kinase At1g80870 155 265 - -
Trme1145g00001 732 SUPERFAMILY Protein kinase-like (PK-like) 59 718 IPR011009 -
Trme1145g00001 732 SMART serkin_6 79 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1145g00001 732 PANTHER OS07G0586332 PROTEIN 10 727 IPR044576 -
Trme1145g00001 732 Gene3D Transferase(Phosphotransferase) domain 1 155 268 - -
Trme1145g00001 732 Gene3D Transferase(Phosphotransferase) domain 1 555 704 - -
Trme1145g00001 732 ProSiteProfiles Protein kinase domain profile. 79 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1145g00001 732 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Trme1145g00001 732 Coils Coil 724 732 - -
Trme1145g00001 732 Gene3D Phosphorylase Kinase; domain 1 46 154 - -
Trme1145g00001 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Trme1145g00001 732 Pfam Protein kinase domain 81 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1145g00001 732 MobiDBLite consensus disorder prediction 709 732 - -
Trme1145g00001 732 FunFam Receptor-like serine/threonine-protein kinase At4g25390 552 704 - -
Trme1145g00001 732 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Trme1145g00001 732 MobiDBLite consensus disorder prediction 422 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1145g00001 Trme-Chr1145 419 2617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1145g00001 563 698 Receptor kinase-like Gene Family AT3G58690 32.117 3.47e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trme1145g00001 Pkinase 8.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1145g00001 - - tpra:123899844 1406.35