Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11454g00001 ATATCAGATGTATTGTGTGATGCTGGTAAGTCTTGTGGCGTGGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCTCTGCACTTAAATCTGGCATTGATATTGTCATTGGAACCCCTGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGTCTACAAGAAGTTTCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGTTAGCAGTTCATCACTTAGCTCAGGAATTTATGGATCCCAATCCTGTTAAAGTTGTTGTAGGGTCAGAGGATTTATCTGCCAATCATGATGTCATGCAGATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTTGAAAAATACCACAAATCTCAAAAGAATCGAGTATTAGTTTTTGTTTTGTACAAATGGGAAACCACGCGAGTTGAAAAAATGCTTCAACAAGGGTACTATGCTACTATTGTTGCAATATGGGTTGGAAAGCGGTGTCAATAA 597 0.407 ISDVLCDAGKSCGVESVCLYGGTSKGPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGYYATIVAIWVGKRCQ 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11454g00001 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 121 IPR027417 -
Trme11454g00001 198 CDD DEADc 1 119 - -
Trme11454g00001 198 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 9 186 - -
Trme11454g00001 198 SMART ultradead3 1 135 IPR014001 -
Trme11454g00001 198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 118 IPR014001 -
Trme11454g00001 198 Gene3D - 1 126 IPR027417 -
Trme11454g00001 198 Pfam DEAD/DEAH box helicase 8 103 IPR011545 GO:0003676|GO:0005524
Trme11454g00001 198 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 64 72 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11454g00001 Trme-Chr11454 55 1585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11454g00001 1 127 Eukaryotic Initiation Factors Gene Family AT1G72730 35.433 3.94e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11454g00001 K14811 - gmx:100305353 329.331