Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114488g00001 ATGCATCATGCTAGAGTGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCGCGCGCTAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTTCACGAATCTCGTCGCCTACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGTCGCTTTCTCAATACAAAGAAGCTTGAACATAACAATTCT 243 0.428 MHHARVLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRRLHALRRARGNGGRFLNTKKLEHNNS 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114488g00001 81 Gene3D - 13 74 - -
Trme114488g00001 81 SMART cbf3 12 73 IPR001289 GO:0003700|GO:0006355
Trme114488g00001 81 PRINTS CCAAT-binding transcription factor subunit B signature 47 70 IPR001289 GO:0003700|GO:0006355
Trme114488g00001 81 PRINTS CCAAT-binding transcription factor subunit B signature 16 38 IPR001289 GO:0003700|GO:0006355
Trme114488g00001 81 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 79 IPR001289 GO:0003700|GO:0006355
Trme114488g00001 81 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 15 70 IPR001289 GO:0003700|GO:0006355
Trme114488g00001 81 MobiDBLite consensus disorder prediction 62 81 - -
Trme114488g00001 81 ProSitePatterns NF-YA/HAP2 subunit signature. 18 38 IPR018362 GO:0003677|GO:0016602
Trme114488g00001 81 ProSiteProfiles NF-YA/HAP2 family profile. 13 73 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114488g00001 Trme-Chr114488 1 533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114488g00001 6 75 CCAAT-HAP2 Transcription Factor Family AT1G30500 75.714 1.67e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme114488g00001 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114488g00001 K08064 - gmx:100782085 151.754