Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114479g00001 GATTTGTTTTCGCATGGCAAGCTCCTTGGACCACAAAAGGGGGTTTTGTTGTATGGACCTCCTGGCACTGGGAAAACTATGCTTGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTATTCATTAATGTCAAGATATCTAACCTCATGAGCAAATGGTTGGGGGATGCCGAAAAGCTCGTTCAGTAA 186 0.4516 DLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVKISNLMSKWLGDAEKLVQ 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114479g00001 61 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 61 IPR027417 -
Trme114479g00001 61 Pfam ATPase family associated with various cellular activities (AAA) 15 60 IPR003959 GO:0005524|GO:0016887
Trme114479g00001 61 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 61 - -
Trme114479g00001 61 Gene3D - 2 61 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114479g00001 Trme-Chr114479 1 288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114479g00001 11 61 Calmodulin-binding Proteins AT3G56690 47.059 4.99e-13 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114479g00001 K22530 - mnt:21395073 118.627