Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme11446g00001 | GTCCGTTACAAAGAAAATCTTCCTTTGGTGCTTCATGGAGTATCATGCACATTTCCTGGTGGAAAGAATATAGGGATAGTTGGACGAACCGGCAGTGGCAAATCTACTTTGATTCAAGCATTGTTTCGATTGATTGAACCAGCAGGTGGAAGTATCCGCATAGACAACATCAATATTTTAGAGATTGGTCTTCATGACCTCCGAAGCCATCTCAGTATCATACCACAGGATCCAACCTTATTTGAAGGGACCATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCGGATAAAGACATTTGGGAGGCGCTAGATAAGTCTCAACTTGGAGATATCATTCCTCTACTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCCGTCGATGCTGCCACTGATAATCTTATCCAGAAGATTATTCGAACAGAGTTCAAAGAGTGCACTGTGGTCACCATTGCGCATCGTATTCCTACTGTCATTGACAGTGATCAAGTTCTGGTGCTCAGTGATGGTCGAGTTGCTGAGTTTGACACCCCTTTACGACTATTAGAGGACAAATCATCCATGTTTCTGAAGTTGGTGAATGAGTACTCCTCGCGGACAAGTGGTATACCAGAATTTTAG | 633 | 0.4313 | VRYKENLPLVLHGVSCTFPGGKNIGIVGRTGSGKSTLIQALFRLIEPAGGSIRIDNINILEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKDIWEALDKSQLGDIIPLLKQSKILVLDEATASVDAATDNLIQKIIRTEFKECTVVTIAHRIPTVIDSDQVLVLSDGRVAEFDTPLRLLEDKSSMFLKLVNEYSSRTSGIPEF | 210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme11446g00001 | 210 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1 | 198 | IPR003439 | GO:0005524 | |
| Trme11446g00001 | 210 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 1 | 202 | - | - | |
| Trme11446g00001 | 210 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 197 | IPR027417 | - | |
| Trme11446g00001 | 210 | Gene3D | - | 1 | 115 | IPR027417 | - | |
| Trme11446g00001 | 210 | SMART | AAA_5 | 20 | 175 | IPR003593 | GO:0016887 | |
| Trme11446g00001 | 210 | CDD | ABCC_MRP_domain2 | 1 | 182 | - | - | |
| Trme11446g00001 | 210 | Pfam | ABC transporter | 11 | 111 | IPR003439 | GO:0005524 | |
| Trme11446g00001 | 210 | Gene3D | - | 116 | 206 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme11446g00001 | Trme-Chr11446 | 133 | 1442 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme11446g00001 | 10 | 198 | Calmodulin-binding Proteins | AT2G36910 | 28.054 | 1.67e-20 | 87.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme11446g00001 | - | - | gmx:100781010 | 356.295 |