Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114405g00001 CTGTTGTCTGTTAGATGTAAGAGTGGTAATGGTCATCATGCTCAAGAAGCTCTTCGTCGTGCCAAGTTTAAGTTCCCTGGTCGTCAGAAAATTATTGTTAGCAGAAAGTGGGGATTTACTAAATTGAGTCAGGATGAGTACTTGAAGTTGAAATCTGAGAACAGAATTATGCAGGATGGGGTAAATGCCAAGGTTAGAATTTGA 204 0.3971 MLSVRCKSGNGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSQDEYLKLKSENRIMQDGVNAKVRI 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114405g00001 67 SUPERFAMILY Ribosomal protein L16p/L10e 1 41 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trme114405g00001 67 PANTHER 60S RIBOSOMAL PROTEIN L10 1 65 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trme114405g00001 67 Gene3D - 46 67 - -
Trme114405g00001 67 FunFam 60S ribosomal protein L10, putative 41 66 - -
Trme114405g00001 67 Gene3D Ribosomal protein L10e/L16 1 45 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114405g00001 Trme-Chr114405 2 325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114405g00001 1 64 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 76.562 6.69e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114405g00001 K02866 - gmx:100779884 116.701