Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114375g00001 GGAGCTGCTGTGCTACAAAATTGCAAGATATACACAAGAGTTCCACTTCCATTACAAAAGGTTACAATCACAGCTCAAGGTAGGAAAAGTCCACATCAAAGCACAGGGTTTACAATCCAAGATAGCTATGTTTTGGCTTCACAACCTACATATTTGGGAAGGCCATGGAAGGAATATTCTAGAACAGTTTACATTAACACATACATGAGTAGTATGGTTCAACCTCGAGGGTGGCTCGAGTGGCTCGGAAACTTTGCATTAGACACTTTGTGGTACGGCGAATACAGAAATTATGGACCTGGTGCATCACTTGTAGGCAGGGTTAAATGGCCTGGTTATCATGTCATTAAAGATGCTTCTACTGCCGGATATTTTACGGTTCAGCGGTTTCTTAATGGCGGTTCATGGTTACCTAGAACAGGTATCAAGTTCACAGCAGGCTTGAGCAATTGA 453 0.426 GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQPTYLGRPWKEYSRTVYINTYMSSMVQPRGWLEWLGNFALDTLWYGEYRNYGPGASLVGRVKWPGYHVIKDASTAGYFTVQRFLNGGSWLPRTGIKFTAGLSN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114375g00001 150 Pfam Pectinesterase 1 133 IPR000070 GO:0030599|GO:0042545
Trme114375g00001 150 PANTHER PECTINESTERASE 2 138 - -
Trme114375g00001 150 SUPERFAMILY Pectin lyase-like 1 147 IPR011050 -
Trme114375g00001 150 Gene3D - 1 150 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114375g00001 Trme-Chr114375 1 453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114375g00001 1 150 Carbohydrate Esterase AT3G05620 78.000 1.24e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114375g00001 K01051 - gmx:100810565 296.204