Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114339g00001 ACTTTTGGTCAGGTTTTGGAATGCTGGGATAGAGAAATGAGGGAGATGGTTGCCATAAAAGTCGTGAGGAGTGTTAAGAAATATCGTGAAGCAGCAATGTTAGAAGTTGATGTGCTCCAGTTGCTTGGGAAGTATGACAGGAGTGGCAGCCGCTGTGTTCAAATACGCAACTGGTTTGACTACCGGAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTCCGGAAGAACAACTATCGCCCGTTTCCGGTTGATCTTGTCCGTGAGCTAGGAAGACAATTGTTGGAAAGTGTAGCATGTGCGTAA 324 0.4383 TFGQVLECWDREMREMVAIKVVRSVKKYREAAMLEVDVLQLLGKYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLESVACA 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114339g00001 107 Gene3D Phosphorylase Kinase; domain 1 1 71 - -
Trme114339g00001 107 Pfam Protein kinase domain 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme114339g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 1 105 IPR011009 -
Trme114339g00001 107 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 105 - -
Trme114339g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 45 106 - -
Trme114339g00001 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114339g00001 Trme-Chr114339 63 566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114339g00001 2 101 EF-hand Containing Proteins AT5G22840 31.429 2.35e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Trme114339g00001 Pkinase 8.7e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114339g00001 K08287 - fve:101305429 208.764