Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11432g00001 ATGTTTCATACGGTGCACACTACTCCTGTTTGTTTTGTAGATGCTAAGAGGCTAATTGGTAGGAGGTTTAGTGACCCTATAGTTCAAGATGATATGAAATTGTGGCCATTTAAAGTAATTGGCGGTCTCGATGACAAACCCATGATTGTTGTCAATTACAACGGAGAAGAAAAAAAAATTTCTGCTGAGGAAATCTCATCCATGGTATTGAGAAAAATGCGTGAGATTGCAGAAGATTACCTTGGATCAACAGTGCAAGATGTTGTTATAACTGTTCCTGCTTATTTTAATAACKCACAACGCCAAGCTACTAGAGATGCAKGTGWWATTGCAGGCATGAATGTTATGMAAATAATCAATGAGCCTACTGCAGCAGCAATTGCGTATGGCCTCAACATGAAACCGTTTAAATTTAATCATCGATGCAGACATGTTTTCATTTTTGATTTAGGTGGTGGTACATTGGATGTGTCTATTCTCACATTTGAAAAGGAAGATATCCAAGTTGAGGCCATTGGAGGAGACACTCACCTCGGGGGACAAGACTTTGATGATGCAATGGTGAAACATTTTGTGAAGGAGTTCTTGAGGAAGCATAATATTGACATTAGTAGAGACCCAAGAGCCGTGAGGAGGTTGAAGTCTGCTTGTGAGAAAGCAAAGAGGACACTTTCTTCCAATACTCACACTACCATTGAGATAGAATGTTTACATAAAGATATAGACTTCCACTCAACAATTAGTCGCGCAAAGTTTGAGGAACTCAACGAAAATCATTTCGAAAGGTGCATGGAGATTGTAGAAAAATGTTTCACAGATAGTAGGATGGAGAAGAGTAGCATTCATGATGTTGTCCTTGTTGGTGGCTCTACGAGGATTGTAAAAGTGCAACAACTATTGAGTGACTTCTTTGAAGGGAAAAATTTATGCAAAAGCATAAATGCGGATGAGGCAGTTGCACATGGTGCTGCCGTCCAAGCTTCTATATTGAGTGGCAAGTTTAGTGAAAAGGTGCAAGATTTGCTATTGAGGGATGTTATTCCTTTGTCTCTTGGATTGGAGACTCGCGGGGGAATCATGGAAATAATAATTCCAAGGAATACCAAAATTCCTACCAACATGGAACGCGTATTCACGACACATTTGAACAACCAAACCAATATTCTAATTCATGTTTATGAGGGTGAGAGACAAACAACTAGGGACAACAACTTGCTAGGAAATTTTTTGTTCGAAATTCCTCCAGCTCTAGCACGTGTTCCTCAAATCAGGGTCAGCTTCCGAATTGATGATGATGGCATATTACAAGTCACTGCCTCAGAAAAGTTCCTTGGAATTAACAAGAAGGTTGAAATTATTATAAGTGATAACGGAAGACTTTCAAAGGWGGAAATTGAGAGGATGATCAAAGAAGCTGAGAAGTGCAAAGATGAAGACAAGAGGTATAGGAAGAAGGTAGAAGCAAGACATGCATTGGAGACGTATGCATACAATATGAGGAAAGTGATAAATGATAAGGAGATTAGTTCGAATCTTTCCTCTAAAGACAAGAAAGAGATCAATAAAAAAATTGATTTGGTTTTATCGTGG 1590 0.3874 MFHTVHTTPVCFVDAKRLIGRRFSDPIVQDDMKLWPFKVIGGLDDKPMIVVNYNGEEKKISAEEISSMVLRKMREIAEDYLGSTVQDVVITVPAYFNNXQRQATRDAXXIAGMNVMXIINEPTAAAIAYGLNMKPFKFNHRCRHVFIFDLGGGTLDVSILTFEKEDIQVEAIGGDTHLGGQDFDDAMVKHFVKEFLRKHNIDISRDPRAVRRLKSACEKAKRTLSSNTHTTIEIECLHKDIDFHSTISRAKFEELNENHFERCMEIVEKCFTDSRMEKSSIHDVVLVGGSTRIVKVQQLLSDFFEGKNLCKSINADEAVAHGAAVQASILSGKFSEKVQDLLLRDVIPLSLGLETRGGIMEIIIPRNTKIPTNMERVFTTHLNNQTNILIHVYEGERQTTRDNNLLGNFLFEIPPALARVPQIRVSFRIDDDGILQVTASEKFLGINKKVEIIISDNGRLSKXEIERMIKEAEKCKDEDKRYRKKVEARHALETYAYNMRKVINDKEISSNLSSKDKKEINKKIDLVLSW 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11432g00001 530 PRINTS 70kDa heat shock protein signature 313 333 - -
Trme11432g00001 530 PRINTS 70kDa heat shock protein signature 420 436 - -
Trme11432g00001 530 PRINTS 70kDa heat shock protein signature 340 359 - -
Trme11432g00001 530 PRINTS 70kDa heat shock protein signature 88 108 - -
Trme11432g00001 530 PRINTS 70kDa heat shock protein signature 281 297 - -
Trme11432g00001 530 PRINTS 70kDa heat shock protein signature 153 163 - -
Trme11432g00001 530 FunFam Heat shock 70 kDa 179 262 - -
Trme11432g00001 530 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 336 493 IPR029047 -
Trme11432g00001 530 ProSitePatterns Heat shock hsp70 proteins family signature 2. 147 160 IPR018181 -
Trme11432g00001 530 Pfam Hsp70 protein 11 525 IPR013126 GO:0005524|GO:0140662
Trme11432g00001 530 FunFam Heat shock 70 kDa protein 12 68 - -
Trme11432g00001 530 FunFam Endoplasmic reticulum chaperone BiP 3 141 - -
Trme11432g00001 530 SUPERFAMILY Actin-like ATPase domain 9 133 IPR043129 -
Trme11432g00001 530 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 487 530 IPR029048 -
Trme11432g00001 530 Gene3D - 11 327 - -
Trme11432g00001 530 Gene3D - 489 530 IPR029048 -
Trme11432g00001 530 Coils Coil 465 485 - -
Trme11432g00001 530 FunFam Heat shock 70 kDa protein 333 489 - -
Trme11432g00001 530 PANTHER HEAT SHOCK PROTEIN 70KDA 12 524 IPR013126 GO:0005524|GO:0140662
Trme11432g00001 530 Gene3D - 134 310 - -
Trme11432g00001 530 Gene3D Actin; Chain A, domain 4 179 262 - -
Trme11432g00001 530 SUPERFAMILY Actin-like ATPase domain 144 330 IPR043129 -
Trme11432g00001 530 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 335 488 IPR029047 -
Trme11432g00001 530 Gene3D - 13 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11432g00001 Trme-Chr11432 64 1653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11432g00001 14 530 Calmodulin-binding Proteins AT3G12580 63.900 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11432g00001 K03283 - gmx:100798636 671.774