Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114254g00001 ATGGATAAGGAGATTGGTGGAGACTCTGATAATTCCTTTATGGCTTCAGATTCTGGCAATTATTGGAATACACTTGATGTTGATAACAAGGATAAGGAGGTGTCTAGTTTACGCCAGATGCAGTTGGATGTGGATTCATTAGGCCCTTCTCTTTCCCTAGAACAGCTATTTAGTATCCACGACTTTTCTCCAGATTGGGCATATGCTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCTTTCTGGTGAGACCAAATGGGGATGTATGTTCGGCGAAATTGAGGTTTCTGCTGAAGTTTTGGCAGAGAATGTCATACGCTGTCAGACTCCTTTGCATTCACCTGGTCGTGTTCCATTCTATGTTACATGCAGTAATCGGTTAGCCTGTAGTGAGGTCAGAGAATTTGAATATCATGACAATCCATCAAAATTTATAG 457 0.4114 MDKEIGGDSDNSFMASDSGNYWNTLDVDNKDKEVSSLRQMQLDVDSLGPSLSLEQLFSIHDFSPDWAYAGVRTKVLIVGTFLGSKKLSGETKWGCMFGEIEVSAEVLAENVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYHDNPSKFI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114254g00001 152 Pfam IPT/TIG domain 59 144 IPR002909 -
Trme114254g00001 152 FunFam Calmodulin-binding transcription activator 2 52 149 - -
Trme114254g00001 152 CDD IPT 58 146 - -
Trme114254g00001 152 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 149 - -
Trme114254g00001 152 SUPERFAMILY E set domains 59 144 IPR014756 -
Trme114254g00001 152 Gene3D Immunoglobulins 52 150 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114254g00001 Trme-Chr114254 8 571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114254g00001 1 144 CAMTA Transcription Factor Family AT2G22300 48.322 9.83e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114254g00001 K21596 - gmx:100818336 280.411