Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1142411g00001 ATTCCCAAGTTGGAGTCTACGGCAGAGCAAGTGGTTCCAGAAGTGCTAAAAGTTGCTCCGGTGAAAGGAAAACACTACCTCGGCGTTAGACAACGGCTGTGGGGAAAATTTGCGGCGGAGATTTGTGACCCGGCGAAGAACGGAGCTAGAGTTTGGCTCGGAACATTTGAAACTGCCGAAGATGCAGCGTTGGCTTATGATAGAGCTGCGTATAGG 216 0.5093 IPKLESTAEQVVPEVLKVAPVKGKHYLGVRQRLWGKFAAEICDPAKNGARVWLGTFETAEDAALAYDRAAYR 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1142411g00001 72 SMART rav1_2 25 72 IPR001471 GO:0003700|GO:0006355
Trme1142411g00001 72 CDD AP2 24 72 IPR001471 GO:0003700|GO:0006355
Trme1142411g00001 72 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Trme1142411g00001 72 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Trme1142411g00001 72 ProSiteProfiles AP2/ERF domain profile. 25 72 IPR001471 GO:0003700|GO:0006355
Trme1142411g00001 72 PANTHER DNA-BINDING DOMAIN 22 72 IPR044808 GO:0003700|GO:0009873
Trme1142411g00001 72 Gene3D AP2/ERF domain 24 72 IPR036955 GO:0003700|GO:0006355
Trme1142411g00001 72 Pfam AP2 domain 25 71 IPR001471 GO:0003700|GO:0006355
Trme1142411g00001 72 SUPERFAMILY DNA-binding domain 25 71 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1142411g00001 Trme-Chr1142411 1 216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1142411g00001 9 72 AP2-EREBP Transcription Factor Family AT4G17500 78.125 3.12e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme1142411g00001 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1142411g00001 K09286 - csv:101203663 82.8037