Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114232g00001 GGTTTTGTCATAGCATTCATTAAGGGATGGCTTCTATCTGTTGTCATGCTATCTAGTATACCACTTGTTGTCTTGTCTGGTGCTATGACAAGTATGGCTATTGCAAAAGCATCATCAACTGGACAAGCAGCTTATTCTAAATCAGCAAGTGTGGTAGAGCAGACAATAAGTTCCATCCGAACTGTTGCATCATTCACTGGGGAGAAAGAAGCTATAGCTAAATATAATCAGTCCTTAATCAAGGTCTACAAGACTTCAGTGCAGGAGGCACTAGCATCTGGTTTGGGGTTTGCGGCATTCTTTTTTGTTTTTATCTCCAGTTATGCTTTGGCTGTATGGTTTGGTGGGAAACTGATAATAGAGAAAGGATATACGGGAGGGGATGTTATCACAATAATTTTTTGTGTATTTACTGGTTCGATGTAA 426 0.3967 GFVIAFIKGWLLSVVMLSSIPLVVLSGAMTSMAIAKASSTGQAAYSKSASVVEQTISSIRTVASFTGEKEAIAKYNQSLIKVYKTSVQEALASGLGFAAFFFVFISSYALAVWFGGKLIIEKGYTGGDVITIIFCVFTGSM 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114232g00001 141 Pfam ABC transporter transmembrane region 1 140 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme114232g00001 141 PANTHER ABC TRANSPORTER B FAMILY 1 141 IPR039421 -
Trme114232g00001 141 Gene3D ABC transporter type 1, transmembrane domain 1 141 IPR036640 GO:0005524|GO:0016020
Trme114232g00001 141 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 141 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme114232g00001 141 SUPERFAMILY ABC transporter transmembrane region 2 138 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114232g00001 Trme-Chr114232 57 572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114232g00001 1 141 Calmodulin-binding Proteins AT2G36910 34.043 3.44e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114232g00001 K05658 - gmx:100800293 198.364