Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme114158g00001 ATGGGACGTGTGATTCGTGCCCAGCGTAAGGGTGCTGGTTCTGTATTCAAGTCTCACACCCACCACCGCAAAGGTCCCGCTCGTTTCCGTAGTCTCGACTTCGGTGAGCGTAATGGTTACCTTAAAGGAGTTGTAACCGACGTCATCCACGATCCAGGTCGTGGTGCTCCTCTTGCCAAAGTTACTTTCCGTCATCCATTTCGTTACAAGAAACAGAACGAACTTTTTGTTGCTGCTGAAGGTTTATACACCGGTCAATTCATTTACTGCGGTAAGAAAGCTACCCTTGTCGTCGGTAATGTTCTTCCTTTGAGATCTATTCCCGAAGGAGCTGTCATTTGTAACGTTGAAGGTCATGTTGGTGACCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCTATTGTTATCAGTCATAACCCTGATAACGATACCTCTAGGGTTAATTAG 450 0.4667 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRVN 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme114158g00001 149 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme114158g00001 149 PANTHER RIBOSOMAL PROTEIN L2 2 147 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme114158g00001 149 Pfam Ribosomal Proteins L2, C-terminal domain 98 143 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme114158g00001 149 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Trme114158g00001 149 SUPERFAMILY Translation proteins SH3-like domain 99 142 IPR008991 -
Trme114158g00001 149 Gene3D - 1 86 IPR012340 -
Trme114158g00001 149 SMART Ribosomal_L2_C_2 96 149 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme114158g00001 149 FunFam 60S ribosomal protein L2 1 86 - -
Trme114158g00001 149 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Trme114158g00001 149 Gene3D - 90 149 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme114158g00001 Trme-Chr114158 34 573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme114158g00001 1 149 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 91.275 6.74e-101 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme114158g00001 K02938 - gmx:547677 300.056