Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113985g00001 ATCTCTCCCACAAGTGTGAAGTTCCATGTAACTGACGCTACTCTGTCCGAGTTCAACCTCACGAACAACAACAACACGTTATATTACAATTTCAAACTCAATGTCACAGCACGAAACCCCAACAACAACATCATAGTCTATTATCGAAGAATCACCGCAATCGCTTGGTACAAAGACAATGAAATTGGTTATGTGAGTTTGACACCCTTTGATCAAGGACACAAGAATACCACTTTTCTTGGACCTATAGAATTTAAAGGGAATACAAGGTTCAAACTTGGACGTAAACAACTTGACGAGTATTTTGAAGAGACGCGTCTTGGGGTTTATAATGATTTGGCTGTTGATTTCGATGTTCGAATTAGAGCTAAATTTGGTGGATTTAAAAGTGGTCGTTTTAATCCACCGGTTGTGCAGTGTCGTCGTTTGAGAGTTCCTTTAGTTTCGTCCAATGGAACTAACTCATCATCAACATTTTCTTTTAGTGACAGAAGATGTAGTAGTGGTTCTTTCTTTACAGATCGTGATGCAGATGCAGGAGCTTAA 546 0.3919 ISPTSVKFHVTDATLSEFNLTNNNNTLYYNFKLNVTARNPNNNIIVYYRRITAIAWYKDNEIGYVSLTPFDQGHKNTTFLGPIEFKGNTRFKLGRKQLDEYFEETRLGVYNDLAVDFDVRIRAKFGGFKSGRFNPPVVQCRRLRVPLVSSNGTNSSSTFSFSDRRCSSGSFFTDRDADAGA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113985g00001 181 PANTHER OS05G0367900 PROTEIN 2 150 IPR044839 GO:0098542
Trme113985g00001 181 Pfam Late embryogenesis abundant protein 34 134 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113985g00001 Trme-Chr113985 87 632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113985g00001 6 153 SNARE and Associated Proteins AT1G32270 34.000 2.86e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113985g00001 - - vvo:131598780 300.056