Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113984g00001 ATGTCGGTGTCCTATATTTTTTACATTAGCGGTGTCGGTGTCCGTGTCCGTGTCGTGTCGCGGTGTCCGTGTCGGAGTCCGTGCTTCATTGAACCAAGATACTTGTGCAAAACTTCCAAAAGGTATTGGACACAAGGTGGTTCGTTCAGAAACATCCCTCTTGGAGGTGGTCATCCCAGGAAGAACAAGAAGATCATAACATCATCACCATCACTCTCATCATCTATATCTTCACATAACATGATTAAAGGCAATGATCTTAATTTGGCTTTTCCAGCTATGGACAAATATCATGTTGCAGGCATGTTGTGTTCTTCTCCATATGTTGAAATCAGTGACAATGACAACAACACTTGTTCTAGTGGTTTGATCAATTCAGCTAATAACTATGTAAATGAGGCTAATGCAACTGCAGTTGCGGTTGCGAATTGTGATGACATTGCAGAGACCTCTAAAACAATTAATTATATTG 472 0.4089 MSVSYIFYISGVGVRVRVVSRCPCRSPCFIEPRYLCKTSKRYWTQGGSFRNIPLGGGHPRKNKKIITSSPSLSSSISSHNMIKGNDLNLAFPAMDKYHVAGMLCSSPYVEISDNDNNTCSSGLINSANNYVNEANATAVAVANCDDIAETSKTINYI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113984g00001 157 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 110 IPR045174 GO:0003700|GO:0006355
Trme113984g00001 157 Pfam Dof domain, zinc finger 31 64 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113984g00001 Trme-Chr113984 1 618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113984g00001 29 102 C2C2-Dof Transcription Factor Family AT3G61850 45.349 2.04e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme113984g00001 zf-Dof 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113984g00001 - - gmx:100793115 92.4337