Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113930g00001 GCTAGAGGGTTGAAGAAACATATGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAACTTGGTGGAGCCTTTGCACCAAAGCCGTCATCTGGACCCCACAAGTCAAGGGAGTGCCTTCCTTTGATCCTCATTCTGCGAAACAGGCTAAAATATGCTCTAACATACAGAGAAGTTATTGCCATCTTGATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATATCCTGCTGGTTTCATGG 259 0.4595 ARGLKKHMKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113930g00001 86 Gene3D - 1 86 IPR036986 GO:0003723
Trme113930g00001 86 Pfam RS4NT (NUC023) domain 2 38 IPR013843 -
Trme113930g00001 86 CDD S4 50 82 - -
Trme113930g00001 86 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 86 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trme113930g00001 86 FunFam 40S ribosomal protein S4 1 86 - -
Trme113930g00001 86 Pfam S4 domain 46 84 IPR002942 GO:0003723
Trme113930g00001 86 ProSitePatterns Ribosomal protein S4e signature. 7 21 IPR018199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113930g00001 Trme-Chr113930 253 614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113930g00001 1 86 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 93.023 1.74e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113930g00001 K02987 - jre:108989885 177.948