Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113922g00001 ATGCCTTCTGGTGTGGTCTTATCGGTTAGGAGACTGAAATCTGTGGACAAGACAATAATCCACCATCAGAACAAGATGATTCGAGAACTTGAAAGGCTAAGCAAAGTTTGTCACGATAATCTTGTGCGACCTATTGGCTATGTCATTTACGAAGATGTTGCTCTTCTCTTGCATAATTATTTTCCTAACGGAACATTATCTCAGCTTCTTCATGAATCTACCAAGCAACCTGAATATCAGCCTGATTGGCCAGCTAGGCTATCCATTGCCATCGGTGTCGCAGAAGGTTTGGCTTTCCTTCATCATGTCGCAATTATCCATCTTGACATTTCTTCTGGAAATGTTCTTTTGGATGCAAATTTCAAGCCATTGGTTGGAGAGATTGAGATTTCAAAACTTTTGGATCCAACCAGAGGCACCGGAAGTATTAGCGCAGTTGCAGGTTCCTTCGGTTACATACCACCAGAATACGCTTACACCATGCAAGTGACAGCACCAGGAAATGTTTACAGCTATGGTGTTGTTTTGCTGGAAATCCTTACA 543 0.4217 MPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHNYFPNGTLSQLLHESTKQPEYQPDWPARLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTRGTGSISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113922g00001 181 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 181 - -
Trme113922g00001 181 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 61 181 - -
Trme113922g00001 181 Gene3D Transferase(Phosphotransferase) domain 1 2 181 - -
Trme113922g00001 181 Pfam Protein tyrosine and serine/threonine kinase 13 181 IPR001245 GO:0004672|GO:0006468
Trme113922g00001 181 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme113922g00001 181 ProSitePatterns Tyrosine protein kinases specific active-site signature. 105 117 IPR008266 GO:0004672|GO:0006468
Trme113922g00001 181 SUPERFAMILY Protein kinase-like (PK-like) 13 181 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113922g00001 Trme-Chr113922 13 645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113922g00001 1 181 Receptor kinase-like Gene Family AT2G41820 81.215 6.66e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme113922g00001 PK_Tyr_Ser-Thr 2.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113922g00001 - - adu:107492611 348.977