Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11386g00001 ACTCCTAGTCTAGATTGTTGTGCGCAAGAAAGTTCAATAATTGAGGATGAATGGGGACGTACACATGCTAGCGGAGTTCATGTAGGTGGAAGAATTGTCCTTAACTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGTAAAGTTCCTTCACTTAACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGGAAAGCAAGATATCAGTGTATCAAATATGTTATGGATAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGTTCTCTCACAATTCTCACATCCTCTCCTTTCCTTTTATCCATGGAAAACTACAATGTTTGTGATCCATCATACCGAGCATAA 465 0.3957 TPSLDCCAQESSIIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLNHKVLTKWFSSGPGKARYQCIKYVMDRAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSLTILTSSPFLLSMENYNVCDPSYRA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11386g00001 154 SUPERFAMILY Ribonuclease H-like 13 130 IPR012337 -
Trme11386g00001 154 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 12 131 IPR030559 GO:0006281|GO:0016035|GO:0019985
Trme11386g00001 154 Gene3D - 7 146 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11386g00001 Trme-Chr11386 2 1076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11386g00001 9 135 Core DNA Replication Machinery Family AT5G63960 24.219 2.07e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11386g00001 K02350 - vum:124820999 239.58