Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113796g00001 ATGGAACAAGAAGAACCTAACGTTACGGCGGTCCCCGCCGGAAGCGGCGACGAAGCTTTACTCGCATTAGGTGAAGATGATGTCAGCAACGGTAACAAAGTTAAAGGTCCTTGGTCTCCTGAAGAAGACGCCATTCTCAGCCGTCTTGTTAGTCAGTTCGGTGCTAGAAATTGGAGTCTCATCGCTCGTGGGATCTCTGGAAGATCCG 208 0.5096 MEQEEPNVTAVPAGSGDEALLALGEDDVSNGNKVKGPWSPEEDAILSRLVSQFGARNWSLIARGISGRS 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113796g00001 69 Gene3D - 34 69 - -
Trme113796g00001 69 CDD SANT 37 69 IPR001005 -
Trme113796g00001 69 SUPERFAMILY Homeodomain-like 29 69 IPR009057 -
Trme113796g00001 69 ProSiteProfiles Myb-like domain profile. 30 69 IPR001005 -
Trme113796g00001 69 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 69 IPR017930 -
Trme113796g00001 69 Pfam Myb-like DNA-binding domain 35 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113796g00001 Trme-Chr113796 56 263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113796g00001 33 69 MYB Transcription Factor Family AT3G55730 75.676 2.97e-14 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme113796g00001 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113796g00001 K09422 - pvu:PHAVU_010G075600g 98.9821