Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11356g00001 ATGGCAAGAAAGAGAAAGGTTTCTGAAGTAGTTGAAGAAGGAAGCATGGTTTGGGATGAAATGATGAAAGAAGCTGCATCACTTGGAGGAGCAAGACGAGTCCGAAAGAGATTTGTCGGTGTTCGACAAAGGCCATCGGGTAGATGGGTTGCTGAGATTAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAAGCTGCTTGTTTGCTTCGCGGCGCAAATACTCGGACGAATTTTTGGCCTTGTTCTCAATCTTCAACTAGTCCTGCTCTTTCTTCAAAGATCACTAATCTTCTACTTCAAAGACTTAAAGAAAGGAATATGAATA 370 0.4081 MARKRKVSEVVEEGSMVWDEMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11356g00001 123 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Trme11356g00001 123 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Trme11356g00001 123 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Trme11356g00001 123 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Trme11356g00001 123 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Trme11356g00001 123 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Trme11356g00001 123 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 119 - -
Trme11356g00001 123 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Trme11356g00001 123 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Trme11356g00001 123 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11356g00001 Trme-Chr11356 1288 1657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11356g00001 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.51e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme11356g00001 AP2 9.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11356g00001 K09286 - gmx:100790398 216.468