Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113449g00001 ATGGGATTCAGGTTACCTGGTATCAGAAGATCATCTTCCAAGGCTGTGGATGATGTCCCAAAAGGCTACCTTGCGGTTTATGTTGGAGACAAAATGAAGCGGTTTGTGATTCCAATTTCATTATTGAATCAACCTTCATTTCAAGAATTGTTAATACAATCAGAAAATGAATTTGGATATGAACATCCAATGGGTGGTCTCACAATTCCTTGCAGCGAAGATGCTTTCTTGGAACTCACTTCTCGCTTCAATGTTAAATAA 261 0.3831 MGFRLPGIRRSSSKAVDDVPKGYLAVYVGDKMKRFVIPISLLNQPSFQELLIQSENEFGYEHPMGGLTIPCSEDAFLELTSRFNVK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113449g00001 86 Pfam Auxin responsive protein 12 81 IPR003676 GO:0009733
Trme113449g00001 86 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 82 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113449g00001 Trme-Chr113449 72 332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113449g00001 18 76 Calmodulin-binding Proteins AT3G43120 52.542 5.88e-17 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113449g00001 K14488 - gmx:100806671 139.428