Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11335g00001 ATGTTTTTGATATCATCAGAAGCTTTTGACACTGAGCGATTGGTATCTGTCCTGGACAAATTGAAGCATAGCCAAGCAGTAGATATTCCGAAGTATGACTTTAAGGGTTACAAGAATAATGTGTTTCCTGCAAGAAGGGTAAACCCTGCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTCAGGGCATTGATGAATATGAAGATATTTGTTGACACAGGTGCTAGTGATGCTATATTTTCATCCCCCCTTCCCCTGCTTTTTCCTTGTGCAGATGCTGATGTTCGTCTGGCAAGAAGGATTAAGCGTGATACTGCCGATAATGCTCGTAATATTGAAGCAGTGCTTGATCAGTATTCAAAATTTGTGAAGCCGGCTTTTGATGACTTTATCCTTCCTACAAAGAAGTATGCTGATATCATTATACCCCGTGGAGGAGATAATCACATACGGGGCATGCACACCCTGATACGCGATTCTCAGACAAAGAAGCATGACTTTGTATTTTACGCTGACCGTTTGATTCGTTTGGTCGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAGTCACTCCTACTGGTAAGACCCCTCCCCCCAATGATGATTTCCTCAGCTTGTAG 648 0.4228 MFLISSEAFDTERLVSVLDKLKHSQAVDIPKYDFKGYKNNVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTGASDAIFSSPLPLLFPCADADVRLARRIKRDTADNARNIEAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHIRGMHTLIRDSQTKKHDFVFYADRLIRLVVEHGLGHLPFTEKQVVTPTGKTPPPNDDFLSL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11335g00001 215 PANTHER URIDINE KINASE 8 202 - -
Trme11335g00001 215 Pfam Phosphoribulokinase / Uridine kinase family 96 155 IPR006083 GO:0005524|GO:0016301
Trme11335g00001 215 Pfam Phosphoribulokinase / Uridine kinase family 5 78 IPR006083 GO:0005524|GO:0016301
Trme11335g00001 215 Gene3D - 156 211 IPR029057 -
Trme11335g00001 215 Pfam Uracil phosphoribosyltransferase 153 205 - -
Trme11335g00001 215 SUPERFAMILY PRTase-like 152 205 IPR029057 -
Trme11335g00001 215 Gene3D - 5 155 IPR027417 -
Trme11335g00001 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 157 IPR027417 -
Trme11335g00001 215 CDD UMPK 8 155 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11335g00001 Trme-Chr11335 102 1628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11335g00001 7 203 PRT Gene Family AT1G55810 65.801 1.28e-98 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11335g00001 K00876 - gmx:100798205 317.005