Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113286g00001 GCCGCCGGGTTGCAAGTGCTTCAAGAAAAGAACCTCATACATCGAGATTTAAAACCACAGAACTTACTGTTGGCAAGTACATCAGCTACGCCGCTTATGAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTTACACCTCTGCAGTTGGCAGATACATTATGTGGTTCACCTTATTACATGGCTCCTGAGATAATTCAGAGTCAGAAGTATGATGCCAAGGCTGATTTATGGAGTGTTGGAGCAATATTGTATCAGCTAGTTGTCGGGAAACCACCATTTGATGGAAATAGTCAATTGCAGGTT 303 0.4257 AAGLQVLQEKNLIHRDLKPQNLLLASTSATPLMKIGDFGFARSLTPLQLADTLCGSPYYMAPEIIQSQKYDAKADLWSVGAILYQLVVGKPPFDGNSQLQV 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113286g00001 101 SMART serkin_6 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme113286g00001 101 SUPERFAMILY Protein kinase-like (PK-like) 2 100 IPR011009 -
Trme113286g00001 101 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 1 100 IPR045269 GO:0004674|GO:0006914
Trme113286g00001 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme113286g00001 101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
Trme113286g00001 101 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trme113286g00001 101 Pfam Protein kinase domain 2 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113286g00001 Trme-Chr113286 1 647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113286g00001 7 96 AGC Kinase Gene Family AT3G08730 43.333 4.15e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Trme113286g00001 Pkinase 2.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113286g00001 - K08269 gmx:100782508 189.889