Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113280g00001 ATGAAGCACCATACATATTTGTCATCGAAGTCATGTGCTGGAACGCCTGAGTGGATGGCGCCAGAAGTCTTACGGAACGAGCCTGCCAATGAGAAGTGTGATGTATATAGTTTTGGTGTGATCTTGTGGGAGTTAACTACCACGAAAATCCCATGGCATGGTCTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGTCTTGAAATTCCAGAAGAAATGGATCCAGTAGTAGCTCAAATTATACGTGATTGCTGGCAAACGTAA 276 0.4384 MKHHTYLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTKIPWHGLNPMQVVGAVGFQNKRLEIPEEMDPVVAQIIRDCWQT 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113280g00001 91 Pfam Protein tyrosine and serine/threonine kinase 2 90 IPR001245 GO:0004672|GO:0006468
Trme113280g00001 91 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme113280g00001 91 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Trme113280g00001 91 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 90 - -
Trme113280g00001 91 SUPERFAMILY Protein kinase-like (PK-like) 5 90 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113280g00001 Trme-Chr113280 57 562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113280g00001 1 91 MAP Kinase Kinase Kinase AT5G11850 85.714 3.02e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trme113280g00001 PK_Tyr_Ser-Thr 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113280g00001 K04424 - gmx:100779790 189.889