Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113259g00001 ACAGGATATGTATTTGTTAACAGTACAATAGGAGGCAATGGTAGAATATGGTTAGGTCGAGCATGGAGACCATATTCTCGTGTTATTTTTGCATTCACAACTATGTCTGATATCATTGCCCCTGAAGGTTGGAATGATTTCAATGACCCTACAAGAGACCAGACTATATTTTATGGAGAGTACAATTGTTCTGGGCCAGGGGCTAGTGTGAATATGAGGGCCCCTTATGTACAAAGATTGAATGATACACAAGCTTTTCAATTTCTTAACACAAGTTTTATTGATGGTGATCTATGGTTGGAAACTTAG 309 0.3819 TGYVFVNSTIGGNGRIWLGRAWRPYSRVIFAFTTMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGASVNMRAPYVQRLNDTQAFQFLNTSFIDGDLWLET 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113259g00001 102 Gene3D - 1 102 IPR012334 -
Trme113259g00001 102 Pfam Pectinesterase 15 97 IPR000070 GO:0030599|GO:0042545
Trme113259g00001 102 SUPERFAMILY Pectin lyase-like 1 100 IPR011050 -
Trme113259g00001 102 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113259g00001 Trme-Chr113259 1 403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113259g00001 1 101 Carbohydrate Esterase AT1G05310 72.277 2.72e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113259g00001 - - gmx:100806629 197.978