Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113215g00001 ATGCAAGTCTCTTTGGATTGGCCAACGGAACTTCACGTGGCGCCGTGCCATCGGCTAGGTGGAGGAAGTCCTGATTATGCTCATGACTCGATATCAATTGGTGCATTTCATGCTATGAGGAAAGGTATAATCACTGTTGCATCAGCTGGAAATGATGGTCCAAGTATGGGAAGTGTTACAAATACTGCACCATGGATTGTGACAGTAGCTGCTAGTGGCATTGACAGAGCTTTCAAGAGCACTGTACAATTAGGAAGTGGAAAAAATGTTTCT 273 0.4469 MQVSLDWPTELHVAPCHRLGGGSPDYAHDSISIGAFHAMRKGIITVASAGNDGPSMGSVTNTAPWIVTVAASGIDRAFKSTVQLGSGKNVS 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113215g00001 91 ProSiteProfiles Serine proteases, subtilase domain profile. 1 91 - -
Trme113215g00001 91 SUPERFAMILY Subtilisin-like 22 88 IPR036852 GO:0004252|GO:0006508
Trme113215g00001 91 Gene3D Peptidase S8/S53 domain 19 74 IPR036852 GO:0004252|GO:0006508
Trme113215g00001 91 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 87 IPR045051 -
Trme113215g00001 91 Gene3D - 75 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113215g00001 Trme-Chr113215 127 512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113215g00001 25 91 Subtilisin-like Serine Gene Family AT4G00230 74.627 4.18e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113215g00001 - - gmx:100795950 127.872