Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113177g00001 ATGCTCAGCGAGAGAGAAATTCGCCGCGATTCCAAGTTGTGCCCGTATTGTGACATGGCGATTTCTCGAACTGAAGGTTGTAATAAAATGAAGTGCGGTAATTGTGGAGAGTACTTCTGTTACCGCTGTAACAAACCACTTGATGCATCAGATCCATATGGACATTTCAGGGACGAGGGGTCGTGTGAATTGTTCCCGCGGGAAATGGTTGAGAACTGGCAGCAAGCACACATAAATCCTCGCCAGGAAATACAACAAATACATGCTGAACTCTTTCACCTCGGTGGCTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAG 324 0.4568 MLSEREIRRDSKLCPYCDMAISRTEGCNKMKCGNCGEYFCYRCNKPLDASDPYGHFRDEGSCELFPREMVENWQQAHINPRQEIQQIHAELFHLGGSACPSCRQFNVK 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113177g00001 108 Pfam IBR domain, a half RING-finger domain 8 47 IPR002867 GO:0008270
Trme113177g00001 108 SUPERFAMILY RING/U-box 4 56 - -
Trme113177g00001 108 CDD Rcat_RBR_RNF14 1 65 IPR047548 GO:0008270
Trme113177g00001 108 Gene3D - 1 97 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113177g00001 7 85 ARIADNE family AT2G31780 28.972 9.82e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113177g00001 K11971 - vum:124821414 174.866