LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme113177g00001	ATGCTCAGCGAGAGAGAAATTCGCCGCGATTCCAAGTTGTGCCCGTATTGTGACATGGCGATTTCTCGAACTGAAGGTTGTAATAAAATGAAGTGCGGTAATTGTGGAGAGTACTTCTGTTACCGCTGTAACAAACCACTTGATGCATCAGATCCATATGGACATTTCAGGGACGAGGGGTCGTGTGAATTGTTCCCGCGGGAAATGGTTGAGAACTGGCAGCAAGCACACATAAATCCTCGCCAGGAAATACAACAAATACATGCTGAACTCTTTCACCTCGGTGGCTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAG	324	0.4568	MLSEREIRRDSKLCPYCDMAISRTEGCNKMKCGNCGEYFCYRCNKPLDASDPYGHFRDEGSCELFPREMVENWQQAHINPRQEIQQIHAELFHLGGSACPSCRQFNVK	108

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme113177g00001	108	Pfam	IBR domain, a half RING-finger domain	8	47	IPR002867	GO:0008270
	Trme113177g00001	108	SUPERFAMILY	RING/U-box	4	56	-	-
	Trme113177g00001	108	CDD	Rcat_RBR_RNF14	1	65	IPR047548	GO:0008270
	Trme113177g00001	108	Gene3D	-	1	97	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme113177g00001	7	85	ARIADNE family	AT2G31780	28.972	9.82e-06	40.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme113177g00001	K11971		-	vum:124821414	174.866

Showing 1 to 1 of 1 entries