Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11306g00001 ATGGGAAGGACACCATGTTGTGATAAAATGGGGTTGAAGAAAGGTCCATGGACAACTGAAGAAGATGAAATTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGTAGTTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCGTCGTTGCGGTAAGAGTTGCCGGCTAAGATGGACGAACTACCTGAGACCTGATATTAAACGCGGTCCCTTTACACCTCAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAG 266 0.4323 MGRTPCCDKMGLKKGPWTTEEDEILVNFIKKNGGHGSWRSLPKLAGLRRCGKSCRLRWTNYLRPDIKRGPFTPQEEKLVIQLHAILGN 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11306g00001 88 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Trme11306g00001 88 Gene3D - 11 68 - -
Trme11306g00001 88 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trme11306g00001 88 CDD SANT 16 62 IPR001005 -
Trme11306g00001 88 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trme11306g00001 88 FunFam Myb transcription factor 11 68 - -
Trme11306g00001 88 SMART sant 13 64 IPR001005 -
Trme11306g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 88 IPR017930 -
Trme11306g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Trme11306g00001 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11306g00001 Trme-Chr11306 141 1538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11306g00001 1 88 MYB Transcription Factor Family AT3G61250 88.636 1.09e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme11306g00001 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11306g00001 K09422 - qsa:O6P43_017601 178.333