Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113038g00001 ATGGCAGAGCGTGTTGTAGGACATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAGAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGTCTTCTTGATCATCCAAATGTCGTCTCTTTAAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGTGTGATTAAGCATTACAACAAGTTGAACCAAAGGATGCCAATGATTTATGTGAAGCTCTATACGTACCAGGTATGA 327 0.4006 MAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPMIYVKLYTYQV 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113038g00001 108 FunFam Glycogen synthase kinase-3 beta 1 79 - -
Trme113038g00001 108 SUPERFAMILY Protein kinase-like (PK-like) 3 108 IPR011009 -
Trme113038g00001 108 Pfam Protein kinase domain 3 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme113038g00001 108 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trme113038g00001 108 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 108 - -
Trme113038g00001 108 ProSitePatterns Protein kinases ATP-binding region signature. 6 30 IPR017441 GO:0005524
Trme113038g00001 108 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113038g00001 Trme-Chr113038 113 540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113038g00001 3 108 MAP Kinase Gene Family AT1G18150 33.929 6.01e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trme113038g00001 Pkinase 4.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113038g00001 K27413 - qsu:112005327 220.32