Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113028g00001 CAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGATATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 183 0.4153 QLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113028g00001 60 PANTHER TUBBY-RELATED 1 58 - -
Trme113028g00001 60 PRINTS Tubby superfamily signature 17 36 IPR000007 -
Trme113028g00001 60 PRINTS Tubby superfamily signature 38 60 IPR000007 -
Trme113028g00001 60 Gene3D Tubby Protein; Chain A 1 60 IPR025659 -
Trme113028g00001 60 ProSitePatterns Tub family signature 2. 45 60 IPR018066 -
Trme113028g00001 60 Pfam Tub family 1 55 IPR000007 -
Trme113028g00001 60 SUPERFAMILY Tubby C-terminal domain-like 14 60 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113028g00001 Trme-Chr113028 1 183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113028g00001 1 60 TUB Transcription Factor Family AT2G18280 78.333 1.68e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme113028g00001 Tub 7.6e-25 CL0395