Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme113024g00001 ATGCCAAATTTGAAGGAGTTTAGTTATGGAGATTTGAAAGTTGCCACAAAGAATTTCAAGTCAGATGCATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGAATGCTGAGACACTCTCCCCTACCAAAGCTGGTTCTGGAATGATAGTGGCCATCAAGAAATTGAATTCAGATAGTGTGCAAGGTGTTCAAGAATGGCAGTTGCGGTTTGGTCACAACCTTTATATCATCACAAAATGTGGCCTTCATGATTGA 267 0.4007 MPNLKEFSYGDLKVATKNFKSDALLGEGGFGKVYKGWLNAETLSPTKAGSGMIVAIKKLNSDSVQGVQEWQLRFGHNLYIITKCGLHD 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme113024g00001 88 ProSitePatterns Protein kinases ATP-binding region signature. 25 58 IPR017441 GO:0005524
Trme113024g00001 88 SUPERFAMILY Protein kinase-like (PK-like) 4 72 IPR011009 -
Trme113024g00001 88 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Trme113024g00001 88 PANTHER OS01G0588500 PROTEIN-RELATED 2 71 - -
Trme113024g00001 88 ProSiteProfiles Protein kinase domain profile. 19 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme113024g00001 Trme-Chr113024 178 591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme113024g00001 5 70 Glycoside Hydrolase AT3G07070 45.455 7.56e-14 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme113024g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme113024g00001 - - qsa:O6P43_033520 119.783