Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11279g00001 GTTGGCACAGTGAAGAAAACAGTCGATGCTGGAAAGAGCTCAAGTACAACAAGCATTAATGGGATGCATCGAGAACTAATGAGGCTACCGGATTCCTATCAACCTTATACATCAAACCAGAATGCTGCCAATGATAATGATGATTTCATACAATCAGAATCAGATAGACAGATGCTTCTTATAAAGCAACAGGACGAGGAGTTAGATGAACTTAGTTTAAGCGTGCAAAGAATCGGAGGCGTTGGACTCACGATACACGAAGAACTCCTAGCACAGGAAAAGATTATAGATGAACTTGGTAACGAGATGGACAGTACATCAAATCGTCTAGATTTTGTCCAAAAAAAAGTTGCAATGGTTATGAAGAAAGCTAGTGCGAAAGGCCAGATCATGATGATATTAGCCTTGTTGGNNNNNNNNNNANNNNNNNNNNANNTAGTCTTCTTAACCTAG 453 0.3797 VGTVKKTVDAGKSSSTTSINGMHRELMRLPDSYQPYTSNQNAANDNDDFIQSESDRQMLLIKQQDEELDELSLSVQRIGGVGLTIHEELLAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILALLXXXXXXXXXVFLT 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11279g00001 150 Gene3D - 65 129 - -
Trme11279g00001 150 CDD SNARE_Qc 61 118 - -
Trme11279g00001 150 MobiDBLite consensus disorder prediction 1 22 - -
Trme11279g00001 150 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 58 120 IPR000727 -
Trme11279g00001 150 SUPERFAMILY SNARE fusion complex 56 120 - -
Trme11279g00001 150 SMART tSNARE_6 53 120 IPR000727 -
Trme11279g00001 150 Coils Coil 96 116 - -
Trme11279g00001 150 MobiDBLite consensus disorder prediction 8 22 - -
Trme11279g00001 150 FunFam syntaxin-61 isoform X1 61 122 - -
Trme11279g00001 150 PANTHER GOLGI SNARE BET1-RELATED 32 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11279g00001 Trme-Chr11279 93 1416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11279g00001 1 150 SNARE and Associated Proteins AT1G28490 64.901 9.15e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11279g00001 K08500 - gmx:100793612 207.223