Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme112767g00001 ATGGTTTGGAGATTCTTAATTACMTTTGCTGATGTTCTAGAGTTATGGCCTTTTACTCTTGATGAATTTGTTCAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGCCGGTGGCCATCCAGAGATTGTGGAAGGAGTAAGTTGA 252 0.3849 MVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAVLKVIIKDIEDVARTPSTGLGVNQNGAANPAGGHPEIVEGVS 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme112767g00001 83 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 82 IPR044977 GO:0006357
Trme112767g00001 83 SMART testlast3 1 52 IPR018501 -
Trme112767g00001 83 MobiDBLite consensus disorder prediction 61 83 - -
Trme112767g00001 83 ProSiteProfiles DDT domain profile. 1 52 IPR018501 -
Trme112767g00001 83 Pfam DDT domain 1 49 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme112767g00001 Trme-Chr112767 16 621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme112767g00001 1 81 Homeobox Transcription Factor Family AT1G28420 76.543 2.45e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trme112767g00001 DDT 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme112767g00001 - - qsa:O6P43_031877 162.54