Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme112561g00001 ATGGTTGCATCGCTTATTGCTGCTGGTGCATTTGCTGGAGCAGTGACAGATCCAACTTCACAAGATCCAAATGGTAAAACTGCTGCAACTATTGCGACCAGCAATGGCCACAAGGGACTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGTTCCTAAAGATTCTTCTGAGCTTGAAGCTGAGTTAACTGTCAGCAGTGTGTCTAAGAAAAATCTCGAAGCCAGTGATGATGAGGTTTCACTAAAGAATACCTTGGGTGCTGTCAGAAATGCATCTCAGGCAGCTGCACGGATACAGGCTGCTTTTCGTGCACATTCTTTCAAAAAACGGATAGAGAGAGAAGCTGCCTCTGCCACTTGTCTAAATGGATATGTCAATGGTGTAGGTAGCATTGGTGGATATGCTAGGAGCTTGCGTGATTGCAATTCAGCTGCCTTATCAATTCAGAAGAAGTATCGGGGTTGGAAAGGTCGCAAA 513 0.4522 MVASLIAAGAFAGAVTDPTSQDPNGKTAATIATSNGHKGLAGYLAEADLTSHLSSLTLEKCEVPKDSSELEAELTVSSVSKKNLEASDDEVSLKNTLGAVRNASQAAARIQAAFRAHSFKKRIEREAASATCLNGYVNGVGSIGGYARSLRDCNSAALSIQKKYRGWKGRK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme112561g00001 171 Gene3D - 101 171 - -
Trme112561g00001 171 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 171 - -
Trme112561g00001 171 ProSiteProfiles IQ motif profile. 154 171 IPR000048 GO:0005515
Trme112561g00001 171 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
Trme112561g00001 171 Pfam IQ calmodulin-binding motif 155 171 IPR000048 GO:0005515
Trme112561g00001 171 Pfam IQ calmodulin-binding motif 105 122 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme112561g00001 Trme-Chr112561 137 649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme112561g00001 1 171 CAMTA Transcription Factor Family AT1G67310 60.112 2.39e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme112561g00001 K21596 - gmx:100791430 216.083