Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme112520g00001 GATGCTGAGAAAGCGAAAGATAGCCATGGAATTCGTCCTGGGAAGGGGAAAATGCGTAACCGACGATATATTTCGCGAAAAGGACCACTTATTGTTTATGGTACCGAAGGCGCGAAAGCGGTGAAAGCTTTTAGGAACATTCCTGGTGTGGAGATCACTAATGTGGAGAGATTGAATTTATTGAAACTTGCACCTGGTGGACATTTGGGTAGGTTTGTGGTTTGGACNAAATCGGCATTTGAGAAATTGGATTCGATTTATGGGTCATTTGAGAAAGCTTCTGAGAAGAAAAAGGGGTATGTTCTTCCTAGGGCTAAGATGGTGAACTCTGATTTGACTAGGATTATTAATTCTGATGAAGTTCAATCTGTTGTGAGGCCGATTAAGAAGGATGTTAAGCGTCTGTCGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGGCTTAATCCTTATGCTAAGACTGCTAAGAGAATGGCTTTACTTGCTGAGGCTGAGAGGGTTAAGGCTAAGAAGGAGAAGCTTGACAAGAAGAGAAAGACTGTTTCCAAGGTGATGTTGATATCTATATATTGTGCTCAGTTTTGGTGA 597 0.4087 DAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFEKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRLSLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKVMLISIYCAQFW 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme112520g00001 198 PANTHER 60S RIBOSOMAL PROTEIN L4 1 183 IPR045240 -
Trme112520g00001 198 Coils Coil 160 180 - -
Trme112520g00001 198 Pfam 60S ribosomal protein L4 C-terminal domain 98 170 IPR025755 -
Trme112520g00001 198 Gene3D - 1 126 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme112520g00001 198 SUPERFAMILY Ribosomal protein L4 7 85 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme112520g00001 198 Pfam Ribosomal protein L4/L1 family 25 84 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme112520g00001 Trme-Chr112520 1 597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme112520g00001 1 198 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.828 9.34e-107 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme112520g00001 K02930 - gmx:100786828 317.005