Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme112392g00001 | ATGGAGACTGAGATTGGGAAGGTGCATAACCAGATACAGGAGGCGTCGCAGAGTGAGGAAGATACTCCTTTGAAGAAGAAGCTCAATGAATTTGGAGAGAGGCTGACAATGATGATTGGACTCATTTGTATTTTGGTTTGGCTCATCAATGTTAAGTATTTCCTTACATGGGAGTATGTTAACGGATGGCCTGCCAACTTCAAGTTTTCGTTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCATTGGCTGTGGCTGCTATTCCCGAGGGATTGCCTGCGGTCATCACGACTTGCCTTGCTCTTGGTACTCGCAAGATGGCCCAGAAGAATGCCCTAGTTCGGAAGCTACCAAGTGTCGAAACTTTGGGTTGTACAACTGTTATTTGTTCTGATAAAACTGGTACATTGACTACAAACCAGATGGCTGTTTCGAAACTAGTAGCTATTGGCCCTAATGTAGATGCACTGAGAGCCTTTAAGGTGGAAGGAACTACATATAATCCAAATGATGGTCAAATAGAGAATTGGCCAGCTGGTCGATTGGATGCGAATCTTCAGATGATAGCGAAAATCGCTGCTGTTTGTAATGATGCTGGAGTGTCACAGTCAGAGC | 619 | 0.4426 | METEIGKVHNQIQEASQSEEDTPLKKKLNEFGERLTMMIGLICILVWLINVKYFLTWEYVNGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVAIGPNVDALRAFKVEGTTYNPNDGQIENWPAGRLDANLQMIAKIAAVCNDAGVSQSE | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme112392g00001 | 206 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 11 | 125 | IPR023298 | - | |
| Trme112392g00001 | 206 | Gene3D | - | 1 | 13 | - | - | |
| Trme112392g00001 | 206 | Gene3D | - | 128 | 140 | IPR023214 | - | |
| Trme112392g00001 | 206 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 138 | 203 | IPR023299 | GO:0000166 | |
| Trme112392g00001 | 206 | FunFam | Phospholipid-transporting ATPase IC | 128 | 140 | - | - | |
| Trme112392g00001 | 206 | Gene3D | - | 141 | 205 | IPR023299 | GO:0000166 | |
| Trme112392g00001 | 206 | FunFam | Calcium-transporting ATPase, putative | 3 | 127 | - | - | |
| Trme112392g00001 | 206 | Pfam | E1-E2 ATPase | 1 | 111 | - | - | |
| Trme112392g00001 | 206 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 133 | 139 | IPR018303 | - | |
| Trme112392g00001 | 206 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 203 | - | - | |
| Trme112392g00001 | 206 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Trme112392g00001 | 206 | NCBIfam | HAD-IC family P-type ATPase | 70 | 152 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trme112392g00001 | 206 | Gene3D | - | 14 | 127 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme112392g00001 | Trme-Chr112392 | 1 | 619 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme112392g00001 | 1 | 206 | Primary Pumps ATPases(2) | AT1G07810 | 84.951 | 3.97e-118 | 358 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme112392g00001 | K01537 | - | gmx:100812151 | 382.874 |