Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11229g00001 ATGGATGCTAAGAGTGGTCTTTTTGCAGGGTCTCTTAACAGCAATGAACTTGTTGTCATCCAAGGACACAATGAGCCTAAGACAGTGAAGAACTTGGATGGCCAAGTATGTGAGATATGTGGCGATTCTGTAGGGCGTACGGTAGATGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTCTGCAGGCCATGCTATGAGTATGAAAGAAGAGAAGGCACTCAAGTTTGCCCTCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGTCCGAGAGTTGAGGGAGATGAAGATGAAGAAGATATCGATGACATTGAATACGAATTTAAAATGGAGGAGGAAAGGTACAAGCTTAAGCACGAAGAGAGTATGCGTAGCAGAGATGACGATGAGAATACTAAATATGGGGAGCAGCCCTTATCTTCTTCCCACAGTGGTGCAAAATTAGATAACAAGGAGAAAACAGATGATTGGAAGTTGCAACAAGGCAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAGGCCAT 539 0.4341 MDAKSGLFAGSLNSNELVVIQGHNEPKTVKNLDGQVCEICGDSVGRTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEEDIDDIEYEFKMEEERYKLKHEESMRSRDDDENTKYGEQPLSSSHSGAKLDNKEKTDDWKLQQGNLLIETDAVDPEKA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11229g00001 179 MobiDBLite consensus disorder prediction 118 137 - -
Trme11229g00001 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Trme11229g00001 179 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Trme11229g00001 179 CDD mRING-HC-C4C4_CesA 35 85 - -
Trme11229g00001 179 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Trme11229g00001 179 FunFam Cellulose synthase 19 110 - -
Trme11229g00001 179 SUPERFAMILY RING/U-box 21 107 - -
Trme11229g00001 179 MobiDBLite consensus disorder prediction 118 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11229g00001 Trme-Chr11229 172 1201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11229g00001 1 177 Cell Wall Biosynthesis AT5G17420 57.277 2.22e-63 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11229g00001 K10999 - gmx:100777270 249.98