Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme112290g00001 TTATTGATTTATGAGTATGTTAACAACGGCAATTTAGAGCAGTGGCTTCATGGTGCCATGCGGCAGCATGGATATCTTACTTGGGAAGCTCGGATAAAAATTCTACTTGGAACAGCCAAAGCGCTTGCTTACTTGCACGAGGCGATTGAGCCAAAAGTTGTACATCGGGATATTAAGTCGAGCAATATTTTAATTGATGATAGCTTTAATGCAAAAATATCTGACTTTGGGCTTGCTAAGTTACTTGGTGCCGGAAAAAGTCACATTACAACTAGAGTAATGGGTACTTTTGGGTAA 297 0.3973 LLIYEYVNNGNLEQWLHGAMRQHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDSFNAKISDFGLAKLLGAGKSHITTRVMGTFG 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme112290g00001 98 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672|GO:0006468
Trme112290g00001 98 Pfam Protein kinase domain 2 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme112290g00001 98 PANTHER OS01G0323000 PROTEIN 1 98 - -
Trme112290g00001 98 FunFam Os07g0541700 protein 7 96 - -
Trme112290g00001 98 SUPERFAMILY Protein kinase-like (PK-like) 2 97 IPR011009 -
Trme112290g00001 98 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Trme112290g00001 98 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme112290g00001 Trme-Chr112290 168 598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme112290g00001 1 98 Trihelix Transcription Factor Family AT1G70460 59.184 1.21e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme112290g00001 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme112290g00001 - - han:110930658 197.593