Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11217g00001 ATGCAAACACATTCAATCAGTGAATGCTTAATGAGTTTGTGTTACTGGATCTGTTCTCATTGTAAAGGAAAAATATCACAGGCTAAACGGCGGCAGGCAGCAAAGAAAACTGAAGAGCTTCTCTTGCTGGCCAGTTCTATAAGAAAAGAAAGAGAACAAATTGAGGAGACAGCCAGAGCCAAAGAGGAGACGATCAAATTAGAAGCAGAGATGGAGCTGCAAAGATATAAAGATGACATCCAGAAAATCGAAAAGGAAATTGCACAAATAAGACAGAAGTCTGACTCTTCAAAAATCGCTGCACTAAAACGAGGAATCGATGGAAGCTATGCCGGTAGCTGCAAGGACATGAAAAATGGTTCTGCTCTCGAAGAACCGCAGACCGCGTCCATTTCAGAACTGGTTCAGAAGTTAAATAACTTCTCGATGAAGGGAGGAGGTGTGAAACGTGAAAGGGAGTGCGTGATGTGCCTTTCGGAGGAGATGTCCGTTGTATTCCTTCCATGTGCTCATCAGGTTGTTTGCACAAAGTGCAATGAGCTCCATGAGAAGCAGGGAATGCAAGAATGCCCTTCTTGCAGGAGCCCTATCCAGGAGCGTATTTCTGTGCGTTATGCGCGTACATAA 627 0.4418 MQTHSISECLMSLCYWICSHCKGKISQAKRRQAAKKTEELLLLASSIRKEREQIEETARAKEETIKLEAEMELQRYKDDIQKIEKEIAQIRQKSDSSKIAALKRGIDGSYAGSCKDMKNGSALEEPQTASISELVQKLNNFSMKGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNELHEKQGMQECPSCRSPIQERISVRYART 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11217g00001 208 CDD RING-HC_MIP1-like 149 203 - -
Trme11217g00001 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 204 IPR013083 -
Trme11217g00001 208 PANTHER OS05G0141500 PROTEIN 26 203 IPR046934 -
Trme11217g00001 208 Coils Coil 44 100 - -
Trme11217g00001 208 Pfam Zinc finger, C3HC4 type (RING finger) 151 199 - -
Trme11217g00001 208 SUPERFAMILY RING/U-box 135 201 - -
Trme11217g00001 208 ProSiteProfiles Zinc finger RING-type profile. 154 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11217g00001 Trme-Chr11217 669 1295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11217g00001 154 203 C3H Transcription Factor Family AT1G73950 42.000 3.89e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11217g00001 - - gmx:100777140 258.07