Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme112074g00001 TCAAACTTTCTTGGAACAAAATTCATTATATATGATACACAGCCTCCCTACACTACTGCCCATATATGCCCTCCAGGGACTGGGAAGACGAGCCGCAGATTTTCTAAAAAGGTATCACCTAAGGTCCCATCCGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGTACTCGAGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCGGGCGGCTCCGTTCCCGGACAGCCAGAACTTATTCCCCGTTCCCTGGAGGACTCCTTTCGGAGCATCTCGTTCTCAAAGTCTCTGGATCATTCCATTGAGTTCAGCAGCTCGCGGTTTTCTGATATCGGGGGATCCTATAATGAGGAAGATGACGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTTAACTTCCGGGGACGAGTAACTGTTGCATCTGTTAAGAACTTTCAGTTGATTGCGTCC 525 0.4705 SNFLGTKFIIYDTQPPYTTAHICPPGTGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIPRSLEDSFRSISFSKSLDHSIEFSSSRFSDIGGSYNEEDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme112074g00001 175 ProSitePatterns Tub family signature 1. 158 171 IPR018066 -
Trme112074g00001 175 PANTHER TUBBY-RELATED 1 174 - -
Trme112074g00001 175 Pfam Tub family 1 174 IPR000007 -
Trme112074g00001 175 Gene3D Tubby Protein; Chain A 1 175 IPR025659 -
Trme112074g00001 175 PRINTS Tubby superfamily signature 140 157 IPR000007 -
Trme112074g00001 175 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Trme112074g00001 175 PRINTS Tubby superfamily signature 46 73 IPR000007 -
Trme112074g00001 175 SUPERFAMILY Tubby C-terminal domain-like 1 174 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme112074g00001 Trme-Chr112074 126 650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme112074g00001 1 175 TUB Transcription Factor Family AT1G25280 70.652 3.98e-82 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme112074g00001 Tub 2e-52 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme112074g00001 K19600 - gmx:100814578 327.791