Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11204g00001 ATGGCTACAACCTCAAATCCTTCCTCTACCACTTCAGAAGATATTTTCCAAAAAAGTGGTGAAGAAGTGAACAACATCAACAAGGGGAAGGAAGTTGTGCAATGTCAACAACCTTCAAACTCCAATACAAAATTGCCTCTTGATTTCATCAAGCACTCAAAAGATGATTCAATTCGTGGGTCGAAAGTGCAAGAGCGTGATTTTTTCACCCCCACAAAAAATTTGGAGGTTGGTTCATCTTCGTTACGTCGGGCTAATAATAAGACCAACAATGAAGAGAACCCTAAGAATAAGTCATCTGACTCGAAGACTTTTTCATGCAGCTTTTGTAAGAAACAATTTTCTACTTCGCAAGCTTTAGGAGGGCACCAAAATGCTCATAAGCGTGAGCGTGCACTCGCAAAACATCGTCAAGAAATGCGTAATGGTTTTGGGATCCCTCGCCATCCTTTTCCTTACTACACTAATTATCCTAGCCTTTATTCATCTTATTATGGGTTTGGATCCTTTAATAAAGCCCTTGGAATTAGAATGGAGTCCATGATCCACAAGCCAAGCTATTCATTGACCCCACCTCCTTATAAGTTCGGTTCTACTCCTACATGGGCACCAATGCAAGAGATGAGAAACTTTTCTTCACTTGGTGGATTGAAGATTGAGGGTCTTAACCCAAATAATGGAAGTAGTGCAACTCCAACTTGGAGGAATAATATGATAAAATTAGATAATATCAGAGAGTCATCTATAAATGTTGCTACAAAGTCAAACTTAATAGTAGACAAGTCAGCTGTGGTCGTTATAAATAATGATCATCATGGTATGAAGAAGGAAGAAGACTCTGATTCAGAATCTACCGAGCTTGATTTGACGCTTAAGCTTTGA 882 0.3912 MATTSNPSSTTSEDIFQKSGEEVNNINKGKEVVQCQQPSNSNTKLPLDFIKHSKDDSIRGSKVQERDFFTPTKNLEVGSSSLRRANNKTNNEENPKNKSSDSKTFSCSFCKKQFSTSQALGGHQNAHKRERALAKHRQEMRNGFGIPRHPFPYYTNYPSLYSSYYGFGSFNKALGIRMESMIHKPSYSLTPPPYKFGSTPTWAPMQEMRNFSSLGGLKIEGLNPNNGSSATPTWRNNMIKLDNIRESSINVATKSNLIVDKSAVVVINNDHHGMKKEEDSDSESTELDLTLKL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11204g00001 293 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Trme11204g00001 293 MobiDBLite consensus disorder prediction 73 88 - -
Trme11204g00001 293 MobiDBLite consensus disorder prediction 1 47 - -
Trme11204g00001 293 Pfam C2H2-type zinc finger 105 129 - -
Trme11204g00001 293 MobiDBLite consensus disorder prediction 270 289 - -
Trme11204g00001 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Trme11204g00001 293 MobiDBLite consensus disorder prediction 48 63 - -
Trme11204g00001 293 Gene3D Classic Zinc Finger 79 145 - -
Trme11204g00001 293 MobiDBLite consensus disorder prediction 1 103 - -
Trme11204g00001 293 SUPERFAMILY beta-beta-alpha zinc fingers 101 132 IPR036236 -
Trme11204g00001 293 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 293 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11204g00001 Trme-Chr11204 113 994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11204g00001 99 186 C2H2 Transcription Factor Family AT5G10970 46.739 9.26e-18 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme11204g00001 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11204g00001 - - tpra:123886838 319.316